YunoHost-Apps/elabftw_ynh
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Merge pull request #8 from YunoHost-Apps/testing

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Testing
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Alexandre Aubin 2023-08-15 11:56:37 +02:00 committed by GitHub
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5
README.md
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@ -5,7 +5,8 @@ It shall NOT be edited by hand.
# eLabFTW for YunoHost # eLabFTW for YunoHost
[![Integration level](https://dash.yunohost.org/integration/elabftw.svg)](https://dash.yunohost.org/appci/app/elabftw) ![Working status](https://ci-apps.yunohost.org/ci/badges/elabftw.status.svg) ![Maintenance status](https://ci-apps.yunohost.org/ci/badges/elabftw.maintain.svg) [![Integration level](https://dash.yunohost.org/integration/elabftw.svg)](https://dash.yunohost.org/appci/app/elabftw) ![Working status](https://ci-apps.yunohost.org/ci/badges/elabftw.status.svg) ![Maintenance status](https://ci-apps.yunohost.org/ci/badges/elabftw.maintain.svg)
[![Install eLabFTW with YunoHost](https://install-app.yunohost.org/install-with-yunohost.svg)](https://install-app.yunohost.org/?app=elabftw) [![Install eLabFTW with YunoHost](https://install-app.yunohost.org/install-with-yunohost.svg)](https://install-app.yunohost.org/?app=elabftw)
*[Lire ce readme en français.](./README_fr.md)* *[Lire ce readme en français.](./README_fr.md)*
@ -19,7 +20,7 @@ eLabFTW is an electronic lab notebook manager for research teams.
It lets you store and organize your research experiments easily. It also features a database where any kind of objects (such as antibodies, plasmids, cell lines, boxes, etc.) can be stored. It is accessed via the browser. Several research teams can be hosted on the same installation. This means eLabFTW can be installed at the institute level and host all team members at the same place. This is what is done at Institut Curie and in several other research centers around the globe. It lets you store and organize your research experiments easily. It also features a database where any kind of objects (such as antibodies, plasmids, cell lines, boxes, etc.) can be stored. It is accessed via the browser. Several research teams can be hosted on the same installation. This means eLabFTW can be installed at the institute level and host all team members at the same place. This is what is done at Institut Curie and in several other research centers around the globe.
**Shipped version:** 4.2.4~ynh2 **Shipped version:** 4.2.4~ynh3
**Demo:** https://demo.elabftw.net/login.php **Demo:** https://demo.elabftw.net/login.php

23
README_fr.md
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@ -5,36 +5,37 @@ It shall NOT be edited by hand.
# eLabFTW pour YunoHost # eLabFTW pour YunoHost
[![Niveau d'intégration](https://dash.yunohost.org/integration/elabftw.svg)](https://dash.yunohost.org/appci/app/elabftw) ![Statut du fonctionnement](https://ci-apps.yunohost.org/ci/badges/elabftw.status.svg) ![Statut de maintenance](https://ci-apps.yunohost.org/ci/badges/elabftw.maintain.svg) [![Niveau d’intégration](https://dash.yunohost.org/integration/elabftw.svg)](https://dash.yunohost.org/appci/app/elabftw) ![Statut du fonctionnement](https://ci-apps.yunohost.org/ci/badges/elabftw.status.svg) ![Statut de maintenance](https://ci-apps.yunohost.org/ci/badges/elabftw.maintain.svg)
[![Installer eLabFTW avec YunoHost](https://install-app.yunohost.org/install-with-yunohost.svg)](https://install-app.yunohost.org/?app=elabftw) [![Installer eLabFTW avec YunoHost](https://install-app.yunohost.org/install-with-yunohost.svg)](https://install-app.yunohost.org/?app=elabftw)
*[Read this readme in english.](./README.md)* *[Read this readme in english.](./README.md)*
> *Ce package vous permet d'installer eLabFTW rapidement et simplement sur un serveur YunoHost. > *Ce package vous permet d’installer eLabFTW rapidement et simplement sur un serveur YunoHost.
Si vous n'avez pas YunoHost, regardez [ici](https://yunohost.org/#/install) pour savoir comment l'installer et en profiter.* Si vous n’avez pas YunoHost, regardez [ici](https://yunohost.org/#/install) pour savoir comment l’installer et en profiter.*
## Vue d'ensemble ## Vue d’ensemble
eLabFTW is an electronic lab notebook manager for research teams. eLabFTW is an electronic lab notebook manager for research teams.
It lets you store and organize your research experiments easily. It also features a database where any kind of objects (such as antibodies, plasmids, cell lines, boxes, etc.) can be stored. It is accessed via the browser. Several research teams can be hosted on the same installation. This means eLabFTW can be installed at the institute level and host all team members at the same place. This is what is done at Institut Curie and in several other research centers around the globe. It lets you store and organize your research experiments easily. It also features a database where any kind of objects (such as antibodies, plasmids, cell lines, boxes, etc.) can be stored. It is accessed via the browser. Several research teams can be hosted on the same installation. This means eLabFTW can be installed at the institute level and host all team members at the same place. This is what is done at Institut Curie and in several other research centers around the globe.
**Version incluse :** 4.2.4~ynh2 **Version incluse :** 4.2.4~ynh3
**Démo :** https://demo.elabftw.net/login.php **Démo :** https://demo.elabftw.net/login.php
## Captures d'écran ## Captures d’écran
![Capture d'écran de eLabFTW](./doc/screenshots/screen-1.jpg) ![Capture d’écran de eLabFTW](./doc/screenshots/screen-1.jpg)
## Avertissements / informations importantes ## Avertissements / informations importantes
Beware, starting with eLabFTW 4.3.0, upstream is moving away from manual installation for a full Docker installation, which will make updating th app more difficult... Beware, starting with eLabFTW 4.3.0, upstream is moving away from manual installation for a full Docker installation, which will make updating th app more difficult...
## Documentations et ressources ## Documentations et ressources
* Site officiel de l'app : <https://www.elabftw.net> * Site officiel de l’app : <https://www.elabftw.net>
* Documentation officielle de l'admin : <https://doc.elabftw.net/> * Documentation officielle de l’admin : <https://doc.elabftw.net/>
* Dépôt de code officiel de l'app : <https://github.com/elabftw/elabftw> * Dépôt de code officiel de l’app : <https://github.com/elabftw/elabftw>
* Documentation YunoHost pour cette app : <https://yunohost.org/app_elabftw> * Documentation YunoHost pour cette app : <https://yunohost.org/app_elabftw>
* Signaler un bug : <https://github.com/YunoHost-Apps/elabftw_ynh/issues> * Signaler un bug : <https://github.com/YunoHost-Apps/elabftw_ynh/issues>
@ -50,4 +51,4 @@ ou
sudo yunohost app upgrade elabftw -u https://github.com/YunoHost-Apps/elabftw_ynh/tree/testing --debug sudo yunohost app upgrade elabftw -u https://github.com/YunoHost-Apps/elabftw_ynh/tree/testing --debug
``` ```
**Plus d'infos sur le packaging d'applications :** <https://yunohost.org/packaging_apps> **Plus d’infos sur le packaging d’applications :** <https://yunohost.org/packaging_apps>

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config_panel.toml
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version = "1.0"
[main]
name = "eLabFTW configuration"
[main.php_fpm_config]
name = "PHP-FPM configuration"
[main.php_fpm_config.fpm_footprint]
ask = "Memory footprint of the service?"
choices = ["low", "medium", "high", "specific"]
default = "low"
help = "low <= 20Mb per pool. medium between 20Mb and 40Mb per pool. high > 40Mb per pool.<br>Use specific to set a value with the following option."
[main.php_fpm_config.free_footprint]
ask = "Memory footprint of the service?"
type = "number"
default = "0"
help = "Free field to specify exactly the footprint in Mb if you don't want to use one of the three previous values."
[main.php_fpm_config.fpm_usage]
ask = "Expected usage of the service?"
choices = ["low", "medium", "high"]
default = "low"
help = "low: Personal usage, behind the SSO. No RAM footprint when not used, but the impact on the processor can be high if many users are using the service.<br>medium: Low usage, few people or/and publicly accessible. Low RAM footprint, medium processor footprint when used.<br>high: High usage, frequently visited website. High RAM footprint, but lower on processor usage and quickly responding."

2
manifest.json
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@ -6,7 +6,7 @@
"en": "Open source electronic lab notebook for research labs", "en": "Open source electronic lab notebook for research labs",
"fr": "Cahier de laboratoire électronique open source pour les laboratoires de recherche" "fr": "Cahier de laboratoire électronique open source pour les laboratoires de recherche"
}, },
"version": "4.2.4~ynh2", "version": "4.2.4~ynh3",
"url": "https://www.elabftw.net", "url": "https://www.elabftw.net",
"upstream": { "upstream": {
"license": "AGPL-3.0-only", "license": "AGPL-3.0-only",

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scripts/config
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#!/bin/bash
#=================================================
# GENERIC STARTING
#=================================================
# IMPORT GENERIC HELPERS
#=================================================
source _common.sh
source /usr/share/yunohost/helpers
ynh_abort_if_errors
#=================================================
# RETRIEVE ARGUMENTS
#=================================================
phpversion=$(ynh_app_setting_get --app=$app --key=phpversion)
current_fpm_footprint=$(ynh_app_setting_get --app=$app --key=fpm_footprint)
#=================================================
# SPECIFIC GETTERS FOR TOML SHORT KEY
#=================================================
get__fpm_footprint() {
# Free footprint value for php-fpm
# Check if current_fpm_footprint is an integer
if [ "$current_fpm_footprint" -eq "$current_fpm_footprint" ] 2> /dev/null
then
echo "specific"
else
echo "$current_fpm_footprint"
fi
}
get__free_footprint() {
# Free footprint value for php-fpm
# Check if current_fpm_footprint is an integer
if [ "$current_fpm_footprint" -eq "$current_fpm_footprint" ] 2> /dev/null
then
# If current_fpm_footprint is an integer, that's a numeric value for the footprint
echo "$current_fpm_footprint"
else
echo "0"
fi
}
#=================================================
# SPECIFIC SETTERS FOR TOML SHORT KEYS
#=================================================
set__fpm_footprint() {
if [ "$fpm_footprint" != "specific" ]
then
ynh_app_setting_set --app=$app --key=fpm_footprint --value="$fpm_footprint"
fi
}
set__free_footprint() {
if [ "$fpm_footprint" == "specific" ]
then
ynh_app_setting_set --app=$app --key=fpm_footprint --value="$free_footprint"
fi
}
#=================================================
# GENERIC FINALIZATION
#=================================================
ynh_app_config_validate() {
_ynh_app_config_validate
if [ "${changed[fpm_usage]}" == "true" ] || [ "${changed[fpm_footprint]}" == "true" ] || [ "${changed[free_footprint]}" == "true" ]; then
# If fpm_footprint is set to 'specific', use $free_footprint value.
if [ "$fpm_footprint" == "specific" ]
then
fpm_footprint=$free_footprint
fi
if [ "$fpm_footprint" == "0" ]
then
ynh_print_err --message="When selecting 'specific', you have to set a footprint value into the field below."
exit 0
fi
fi
}
ynh_app_config_apply() {
_ynh_app_config_apply
ynh_add_fpm_config --phpversion=$phpversion --usage=$fpm_usage --footprint=$fpm_footprint
}
ynh_app_config_run $1