diff --git a/scripts/restore b/scripts/restore
index cd47ece..3e534d4 100755
--- a/scripts/restore
+++ b/scripts/restore
@@ -70,7 +70,7 @@ then
 	ynh_script_progression --message="Migrating binary architecture..."
 
 	# Download, check integrity, uncompress and patch the source from app.src
-	ynh_setup_source --dest_dir="$install_dir"  --keep="config.yaml"
+	ynh_setup_source --dest_dir="$install_dir" --full_replace=1 --keep="config.yaml"
 fi
 
 # FIXME: this should be managed by the core in the future
diff --git a/scripts/upgrade b/scripts/upgrade
index 6c45835..759b680 100644
--- a/scripts/upgrade
+++ b/scripts/upgrade
@@ -292,7 +292,7 @@ then
 	architecture=$(detect_arch)
 	
 	# Download, check integrity, uncompress and patch the source from app.src
-	ynh_setup_source --dest_dir="$install_dir"  --keep="config.yaml"
+	ynh_setup_source --dest_dir="$install_dir" --full_replace=1 --keep="config.yaml"
 fi
 
 # FIXME: this should be managed by the core in the future