mirror of
https://github.com/YunoHost-Apps/jupyterlab_ynh.git
synced 2024-09-03 19:26:35 +02:00
Merge pull request #8 from YunoHost-Apps/testing
Add backup and restore scripts
This commit is contained in:
Kayou
GitHub
commit
5627adf72a
10 changed files with 296 additions and 104 deletions
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@ -16,7 +16,7 @@
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setup_private=1
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setup_public=1
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upgrade=1
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backup_restore=0
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backup_restore=1
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multi_instance=1
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incorrect_path=1
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port_already_use=1
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@ -2,7 +2,7 @@
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"name": "JupyterLab",
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"id": "jupyterlab",
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"packaging_format": 1,
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"version": "0.35.4~ynh2",
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"version": "0.35.4~ynh3",
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"description": {
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"en": "JupyterLab for Yunohost, an extensible environment for interactive and reproducible computing (notebook, terminal, text editor, file browser, rich outputs, etc.)",
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"fr": "JupyterLab pour YunoHost, un environnement informatique extensible, interactif et reproductible (bloc-notes, terminal, éditeur de texte, explorateur de fichiers, texte enrichi, etc.)"
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@ -21,7 +21,7 @@
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"nginx"
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],
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"arguments": {
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"install" : [
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"install": [
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{
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"name": "domain",
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"type": "domain",
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@ -43,7 +43,7 @@
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},
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{
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"name": "admin",
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"type": "user",
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"type": "user",
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"ask": {
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"en": "Choose an admin user",
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"fr": "Choisissez l’administrateur"
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@ -70,4 +70,4 @@
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}
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]
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}
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}
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}
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@ -34,6 +34,8 @@ create_dir() {
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# CONFIGURATION FILES FOR JUPYTERLAB
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#=================================================
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config_jupyterlab() {
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ynh_print_info "Configuring JupyterLab..."
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create_dir
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jupyterlab_conf_path="$config_path/jupyterhub_config.py"
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@ -55,6 +57,8 @@ config_jupyterlab() {
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}
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config_jupyter_notebook() {
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ynh_print_info "Configuring Jupyter Notebook..."
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jupyter_notebook_conf_path="$final_path/etc/jupyter/jupyter_notebook_config.py"
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ynh_backup_if_checksum_is_different $jupyter_notebook_conf_path
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@ -70,7 +74,9 @@ config_jupyter_notebook() {
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#=================================================
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# CREATE A DEDICATED SYSTEMD CONFIG
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#=================================================
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add_systemd_config () {
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add_systemd_config() {
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ynh_print_info "Adding Jupyterlab as a service..."
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sudo cp ../conf/systemd.service.default ../conf/systemd.service
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tempsystemdconf="../conf/systemd.service"
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@ -85,6 +91,8 @@ add_systemd_config () {
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# REMOVE THE CONFIGURATION FILE FOR JUPYTERLAB
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#=================================================
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remove_config_jupyterlab() {
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ynh_print_info "Removing the configuration file..."
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ynh_secure_remove "$config_path/jupyterhub_config.py"
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}
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@ -131,33 +139,36 @@ setup_source() {
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src_format=${src_format:-tar.gz}
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src_format=$(echo "$src_format" | tr '[:upper:]' '[:lower:]')
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src_extract=${src_extract:-true}
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if [ "$src_filename" = "" ] ; then
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if [ "$src_filename" = "" ]; then
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src_filename="${src_id}.${src_format}"
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fi
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if ! test -e "$final_path"
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then
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if ! test -e "$final_path"; then
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local local_src="/opt/yunohost-apps-src/${YNH_APP_ID}/${src_filename}"
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if test -e "$local_src"
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then # Use the local source file if it is present
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ynh_print_info "Downloading anaconda files (used by JupyterLab)..."
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if test -e "$local_src"; then # Use the local source file if it is present
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cp $local_src $src_filename
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else # If not, download the source
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local out=`wget -nv -O $src_filename $src_url 2>&1` || ynh_print_err $out
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else # If not, download the source
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wget -q --show-progress -O $src_filename $src_url
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fi
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# Check the control sum
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echo "${src_sum} ${src_filename}" | ${src_sumprg} -c --status \
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|| ynh_die "Corrupt source"
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echo "${src_sum} ${src_filename}" | ${src_sumprg} -c --status ||
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ynh_die "Corrupt source"
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ynh_print_info "Installing anaconda (used by JupyterLab)..."
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bash $src_filename -b -p $final_path
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fi
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export "PATH=$final_path/bin/:$PATH"
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if [ "$src_id" = "arm" ]
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then
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ynh_print_info "Installing JupyterLab..."
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if [ "$src_id" = "arm" ]; then
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conda install jupyterlab=$jupyterlab_version notebook nodejs -y
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pip install jupyterhub jupyterhub-ldapauthenticator
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else
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@ -165,4 +176,4 @@ setup_source() {
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fi
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npm install -g configurable-http-proxy
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}
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}
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64
scripts/backup
Normal file
64
scripts/backup
Normal file
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@ -0,0 +1,64 @@
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#!/bin/bash
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#=================================================
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# GENERIC START
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#=================================================
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# IMPORT GENERIC HELPERS
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#=================================================
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# Source YunoHost helpers
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source /usr/share/yunohost/helpers
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# Load common variables and helpers
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source ../settings/scripts/_common.sh
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#=================================================
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# MANAGE SCRIPT FAILURE
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#=================================================
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ynh_clean_setup() {
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true
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}
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# Exit if an error occurs during the execution of the script
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ynh_abort_if_errors
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#=================================================
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# LOAD SETTINGS
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#=================================================
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# Copy NGINX configuration
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domain=$(ynh_app_setting_get "$app" domain)
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#=================================================
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# STANDARD BACKUP STEPS
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#=================================================
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# BACKUP THE NGINX CONFIGURATION
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#=================================================
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ynh_backup "/etc/nginx/conf.d/$domain.d/$app.conf"
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#=================================================
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# BACKUP JUPYTERLAB
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#=================================================
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ynh_print_info "Backuping of JupyterLab..."
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ynh_backup "$final_path/jupyterhub.sqlite"
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#=================================================
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# BACKUP CONF FILES
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#=================================================
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ynh_print_info "Backuping configuration files of JupyterLab..."
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ynh_backup "$config_path/jupyterhub_config.py"
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ynh_backup "$final_path/etc/jupyter/jupyter_notebook_config.py"
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#=================================================
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# BACKUP SYSTEMD
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#=================================================
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ynh_backup "/etc/systemd/system/$app.service"
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@ -54,14 +54,12 @@ path_url="$new_path"
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#=================================================
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change_domain=0
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if [ "$old_domain" != "$new_domain" ]
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then
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if [ "$old_domain" != "$new_domain" ]; then
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change_domain=1
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fi
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change_path=0
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if [ "$old_path" != "$new_path" ]
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then
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if [ "$old_path" != "$new_path" ]; then
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change_path=1
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fi
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@ -78,17 +76,23 @@ yunohost service stop jupyterlab
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#=================================================
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nginx_conf_path=/etc/nginx/conf.d/$old_domain.d/$app.conf
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if [ $change_path -eq 1 ]
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then
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if [ $change_path -eq 1 ]; then
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ynh_print_info "Changing path..."
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# Make a backup of the original nginx config file if modified
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ynh_backup_if_checksum_is_different "$nginx_conf_path"
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# Set global variables for nginx helper
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domain="$old_domain"
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path_url="$new_path"
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# Create a dedicated nginx config
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ynh_add_nginx_config
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fi
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# Change the domain for nginx
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if [ $change_domain -eq 1 ]
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then
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# Delete file checksum for the old conf file location
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if [ $change_domain -eq 1 ]; then
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ynh_print_info "Changing domain..."
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# Delete file checksum for the old conf file location
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ynh_delete_file_checksum "$nginx_conf_path"
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mv $nginx_conf_path /etc/nginx/conf.d/$new_domain.d/$app.conf
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# Store file checksum for the new config file location
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@ -11,79 +11,81 @@
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# | arg: -t, --timeout= - Timeout - The maximum time to wait before ending the watching. Default : 300 seconds.
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# | arg: -e, --length= - Length of the error log : Default : 20
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ynh_systemd_action() {
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# Declare an array to define the options of this helper.
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declare -Ar args_array=( [n]=service_name= [a]=action= [l]=line_match= [p]=log_path= [t]=timeout= [e]=length= )
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local service_name
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local action
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local line_match
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local length
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local log_path
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local timeout
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# Manage arguments with getopts
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ynh_handle_getopts_args "$@"
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# Declare an array to define the options of this helper.
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declare -Ar args_array=([n]=service_name= [a]=action= [l]=line_match= [p]=log_path= [t]=timeout= [e]=length=)
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local service_name
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local action
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local line_match
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local length
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local log_path
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local timeout
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local service_name="${service_name:-$app}"
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local action=${action:-start}
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local log_path="${log_path:-/var/log/$service_name/$service_name.log}"
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local length=${length:-20}
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local timeout=${timeout:-300}
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# Manage arguments with getopts
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ynh_handle_getopts_args "$@"
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# Start to read the log
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if [[ -n "${line_match:-}" ]]
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then
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local templog="$(mktemp)"
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# Following the starting of the app in its log
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if [ "$log_path" == "systemd" ] ; then
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# Read the systemd journal
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journalctl -u $service_name -f -n0 > "$templog" &
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else
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# Read the specified log file
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tail -F -n0 "$log_path" > "$templog" &
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local service_name="${service_name:-$app}"
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local action=${action:-start}
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local log_path="${log_path:-/var/log/$service_name/$service_name.log}"
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local length=${length:-20}
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local timeout=${timeout:-300}
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ynh_print_info "Waiting for a response from $service_name..."
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# Start to read the log
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if [[ -n "${line_match:-}" ]]; then
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local templog="$(mktemp)"
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# Following the starting of the app in its log
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if [ "$log_path" == "systemd" ]; then
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# Read the systemd journal
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journalctl -u $service_name -f -n0 >"$templog" &
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else
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# Read the specified log file
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tail -F -n0 "$log_path" >"$templog" &
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fi
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# Get the PID of the tail command
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local pid_tail=$!
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fi
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# Get the PID of the tail command
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local pid_tail=$!
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fi
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echo "${action^} the service $service_name" >&2
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systemctl $action $service_name \
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|| ( journalctl --lines=$length -u $service_name >&2 \
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; test -n "$log_path" && echo "--" && tail --lines=$length "$log_path" >&2 \
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; false )
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echo "${action^} the service $service_name" >&2
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systemctl $action $service_name ||
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(
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journalctl --lines=$length -u $service_name >&2 \
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;
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test -n "$log_path" && echo "--" && tail --lines=$length "$log_path" >&2 \
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;
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false
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)
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# Start the timeout and try to find line_match
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if [[ -n "${line_match:-}" ]]
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then
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local i=0
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for i in $(seq 1 $timeout)
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do
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# Read the log until the sentence is found, that means the app finished to start. Or run until the timeout
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if grep --quiet "$line_match" "$templog"
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then
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echo "The service $service_name has correctly started." >&2
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break
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fi
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echo -n "." >&2
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sleep 1
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done
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if [ $i -eq $timeout ]
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then
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echo "The service $service_name didn't fully started before the timeout." >&2
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journalctl --lines=$length -u $service_name >&2
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test -n "$log_path" && echo "--" && tail --lines=$length "$log_path" >&2
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fi
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# Start the timeout and try to find line_match
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if [[ -n "${line_match:-}" ]]; then
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local i=0
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for i in $(seq 1 $timeout); do
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# Read the log until the sentence is found, that means the app finished to start. Or run until the timeout
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if grep --quiet "$line_match" "$templog"; then
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echo "The service $service_name has correctly started." >&2
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break
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fi
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echo -n "." >&2
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sleep 1
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done
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if [ $i -eq $timeout ]; then
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echo "The service $service_name didn't fully started before the timeout." >&2
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journalctl --lines=$length -u $service_name >&2
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test -n "$log_path" && echo "--" && tail --lines=$length "$log_path" >&2
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fi
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echo ""
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ynh_clean_check_starting
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fi
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echo ""
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ynh_clean_check_starting
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fi
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}
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# Clean temporary process and file used by ynh_check_starting
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# (usually used in ynh_clean_setup scripts)
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#
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# usage: ynh_clean_check_starting
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ynh_clean_check_starting () {
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ynh_clean_check_starting() {
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# Stop the execution of tail.
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kill -s 15 $pid_tail 2>&1
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ynh_secure_remove "$templog" 2>&1
|
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}
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}
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|
|
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|||
|
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@ -42,8 +42,8 @@ ynh_webpath_register $app $domain $path_url
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#=================================================
|
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# Check user parameter
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ynh_user_exists "$admin" \
|
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|| ynh_die "The chosen admin user does not exist."
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ynh_user_exists "$admin" ||
|
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ynh_die "The chosen admin user does not exist."
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|
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#=================================================
|
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# STORE SETTINGS FROM MANIFEST
|
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|
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@ -61,6 +61,8 @@ ynh_app_setting_set $app enable_terminal $enable_terminal
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# FIND AND OPEN PORTS
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#=================================================
|
||||
|
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ynh_print_info "Getting ports..."
|
||||
|
||||
# Find free ports
|
||||
port=$(ynh_find_port 8080)
|
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port_hub=$(ynh_find_port $(($port + 1)))
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|
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@ -122,8 +124,8 @@ add_systemd_config
|
|||
|
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# If app is public, add url to SSOWat conf as skipped_uris
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if [[ $is_public -eq 1 ]]; then
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# unprotected_uris allows SSO credentials to be passed anyway.
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ynh_app_setting_set "$app" unprotected_uris "/"
|
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# unprotected_uris allows SSO credentials to be passed anyway.
|
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ynh_app_setting_set "$app" unprotected_uris "/"
|
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fi
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|
||||
#=================================================
|
||||
|
|
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|||
|
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@ -37,8 +37,7 @@ ynh_remove_systemd_config
|
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#=================================================
|
||||
|
||||
# Remove a service from the admin panel, added by `yunohost service add`
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if yunohost service status | grep -q $app
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then
|
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if yunohost service status | grep -q $app; then
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echo "Remove $app service"
|
||||
yunohost service remove $app
|
||||
fi
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||||
|
|
@ -54,6 +53,8 @@ remove_config_jupyterlab
|
|||
# REMOVE APP MAIN DIR
|
||||
#=================================================
|
||||
|
||||
ynh_print_info "Removing JupyterLab..."
|
||||
|
||||
ynh_secure_remove "$final_path"
|
||||
ynh_secure_remove "$config_path"
|
||||
|
||||
|
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@ -64,18 +65,15 @@ ynh_secure_remove "/var/log/$app.log"
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# CLOSE PORTS
|
||||
#=================================================
|
||||
|
||||
if yunohost firewall list | grep -q "\- $port$"
|
||||
then
|
||||
if yunohost firewall list | grep -q "\- $port$"; then
|
||||
echo "Close port $port" >&2
|
||||
yunohost firewall disallow TCP $port 2>&1
|
||||
fi
|
||||
if yunohost firewall list | grep -q "\- $port_hub$"
|
||||
then
|
||||
if yunohost firewall list | grep -q "\- $port_hub$"; then
|
||||
echo "Close port $port_hub" >&2
|
||||
yunohost firewall disallow TCP $port_hub 2>&1
|
||||
fi
|
||||
if yunohost firewall list | grep -q "\- $port_http_proxy$"
|
||||
then
|
||||
if yunohost firewall list | grep -q "\- $port_http_proxy$"; then
|
||||
echo "Close port $port_http_proxy" >&2
|
||||
yunohost firewall disallow TCP $port_http_proxy 2>&1
|
||||
fi
|
||||
|
|
@ -90,4 +88,4 @@ ynh_remove_nginx_config
|
|||
# REMOVE LOGROTATE CONFIGURATION
|
||||
#=================================================
|
||||
|
||||
#ynh_remove_logrotate
|
||||
#ynh_remove_logrotate
|
||||
|
|
|
|||
109
scripts/restore
Normal file
109
scripts/restore
Normal file
|
|
@ -0,0 +1,109 @@
|
|||
#!/bin/bash
|
||||
|
||||
#=================================================
|
||||
# GENERIC START
|
||||
#=================================================
|
||||
# IMPORT GENERIC HELPERS
|
||||
#=================================================
|
||||
|
||||
# Source YunoHost helpers
|
||||
source /usr/share/yunohost/helpers
|
||||
|
||||
# Exit if an error occurs during the execution of the script
|
||||
ynh_abort_if_errors
|
||||
|
||||
if [ ! -e _common.sh ]; then
|
||||
# Get the _common.sh file if it's not in the current directory
|
||||
cp ../settings/scripts/_common.sh ./_common.sh
|
||||
cp ../settings/scripts/experimental_helper.sh ./experimental_helper.sh
|
||||
mkdir ./upgrade.d
|
||||
mkdir ../conf
|
||||
cp ../settings/scripts/upgrade.d/*.sh ./upgrade.d/
|
||||
cp ../settings/conf/*.default ../conf/
|
||||
chmod a+rx _common.sh experimental_helper.sh upgrade.d/*
|
||||
fi
|
||||
|
||||
# Load common variables and helpers
|
||||
source _common.sh
|
||||
source experimental_helper.sh
|
||||
|
||||
#=================================================
|
||||
# MANAGE SCRIPT FAILURE
|
||||
#=================================================
|
||||
|
||||
ynh_clean_setup() {
|
||||
|
||||
true
|
||||
}
|
||||
|
||||
#=================================================
|
||||
# LOAD SETTINGS
|
||||
#=================================================
|
||||
|
||||
# Copy NGINX configuration
|
||||
domain=$(ynh_app_setting_get "$app" domain)
|
||||
path_url=$(ynh_app_setting_get "$app" path_url)
|
||||
|
||||
#=================================================
|
||||
# CHECK IF THE APP CAN BE RESTORED
|
||||
#=================================================
|
||||
|
||||
ynh_webpath_available $domain $path_url ||
|
||||
ynh_die "Path not available: ${domain}${path_url}"
|
||||
test ! -d $final_path ||
|
||||
ynh_die "There is already a directory: $final_path "
|
||||
|
||||
#=================================================
|
||||
# STANDARD RESTORATION STEPS
|
||||
#=================================================
|
||||
# RESTORE THE NGINX CONFIGURATION
|
||||
#=================================================
|
||||
|
||||
ynh_restore_file "/etc/nginx/conf.d/$domain.d/$app.conf"
|
||||
|
||||
#=================================================
|
||||
# REINSTALL DEPENDENCIES
|
||||
#=================================================
|
||||
|
||||
ynh_install_app_dependencies openssh-server
|
||||
|
||||
#=================================================
|
||||
# RESTORE CONF FILES
|
||||
#=================================================
|
||||
|
||||
ynh_print_info "Restoring configuration files of JupyerLab..."
|
||||
|
||||
create_dir
|
||||
|
||||
ynh_restore_file "$config_path/jupyterhub_config.py"
|
||||
|
||||
#=================================================
|
||||
# RESTORE THE APP MAIN DIR
|
||||
#=================================================
|
||||
|
||||
ynh_print_info "Restoring JupyterLab..."
|
||||
|
||||
setup_source $miniconda_architecture
|
||||
|
||||
ynh_restore_file "$final_path/etc/jupyter/jupyter_notebook_config.py"
|
||||
|
||||
#=================================================
|
||||
# SPECIFIC RESTORATION
|
||||
#=================================================
|
||||
# RESTORE SYSTEMD
|
||||
#=================================================
|
||||
|
||||
ynh_restore_file "/etc/systemd/system/$app.service"
|
||||
systemctl enable $app.service
|
||||
|
||||
yunohost service add $app --log "systemd"
|
||||
|
||||
#=================================================
|
||||
# GENERIC FINALIZATION
|
||||
#=================================================
|
||||
# RELOAD NGINX
|
||||
#=================================================
|
||||
|
||||
systemctl reload nginx
|
||||
|
||||
ynh_systemd_action -n $app -a start -l "JupyterHub is now running at" -p "systemd"
|
||||
|
|
@ -82,6 +82,8 @@ setup_source $miniconda_architecture
|
|||
jupyter labextension install @jupyterlab/hub-extension
|
||||
jupyter lab build
|
||||
|
||||
jupyterhub upgrade-db
|
||||
|
||||
chown $admin -R $final_path/share/jupyter
|
||||
|
||||
#=================================================
|
||||
|
|
@ -104,8 +106,8 @@ add_systemd_config
|
|||
|
||||
# If app is public, add url to SSOWat conf as skipped_uris
|
||||
if [[ $is_public -eq 1 ]]; then
|
||||
# See install script
|
||||
ynh_app_setting_set "$app" unprotected_uris "/"
|
||||
# See install script
|
||||
ynh_app_setting_set "$app" unprotected_uris "/"
|
||||
fi
|
||||
|
||||
#=================================================
|
||||
|
|
@ -124,4 +126,4 @@ yunohost service add $app --log "systemd"
|
|||
# START SERVICE
|
||||
#=================================================
|
||||
|
||||
ynh_systemd_action -n $app -a restart -l "JupyterHub is now running at" -p "systemd"
|
||||
ynh_systemd_action -n $app -a restart -l "JupyterHub is now running at" -p "systemd"
|
||||
|
|
|
|||
Loading…
Add table
Reference in a new issue