diff --git a/scripts/upgrade b/scripts/upgrade
index 53b715b..7160fee 100755
--- a/scripts/upgrade
+++ b/scripts/upgrade
@@ -21,7 +21,7 @@ if [ "$upgrade_type" == "UPGRADE_APP" ]
 then
 	ynh_script_progression --message="Upgrading source files..." --weight=1
 
-	ynh_setup_source --dest_dir="$install_dir" --keep="config/.env"
+	ynh_setup_source --dest_dir="$install_dir" --full_replace=1 --keep="config/.env userfiles public/userfiles"
 fi
 
 chmod -R o-rwx "$install_dir"