From d065dbbb3227e098d339dae205884c14aa923b23 Mon Sep 17 00:00:00 2001
From: Denis Chenu <denis@sondages.pro>
Date: Sat, 18 Feb 2017 20:10:20 +0100
Subject: [PATCH 1/4] [fix] Use github link for source file - Fix
 https://github.com/YunoHost-Apps/limesurvey_ynh/issues/17 - Here get a
 specific commit (specific command action for plugin)

---
 app.src            |  6 +++---
 manifest.json      |  2 +-
 scripts/_common.sh | 28 ++++++++++++++--------------
 scripts/install    |  8 ++++----
 4 files changed, 22 insertions(+), 22 deletions(-)

diff --git a/app.src b/app.src
index f1d34ed..8202979 100644
--- a/app.src
+++ b/app.src
@@ -1,3 +1,3 @@
-SOURCE_URL=https://www.limesurvey.org/stable-release?download=1994:limesurvey2622%20170203targz
-SOURCE_SUM=04aef224292ebacbfdf5c92cedc94de2f5900688bde33481a8908b15023df933
-SOURCE_FILE=limesurvey2.62.2+170203.tar.gz
+SOURCE_URL=https://github.com/LimeSurvey/LimeSurvey/archive/a46075a10b6244c850ee11dcf283d38bdd7d8ad5.tar.gz
+SOURCE_SUM=b06778cd6747e4106953810d5aefe9f12d968a3910ce48159bcbb2fe5a61d486
+SOURCE_FILE=limesurvey_2.6.2.1.tar.gz
diff --git a/manifest.json b/manifest.json
index ba8b605..a1d859f 100644
--- a/manifest.json
+++ b/manifest.json
@@ -2,7 +2,7 @@
     "name": "LimeSurvey",
     "id": "limesurvey",
     "packaging_format": 1,
-    "version": "2.62.2",
+    "version": "2.62.2.1",
     "description": {
         "en": "LimeSurvey is used to create advanced poll.",
         "fr": "LimeSurvey est un outil de création et diffusion de sondage en ligne."
diff --git a/scripts/_common.sh b/scripts/_common.sh
index 9b09134..643c1ec 100644
--- a/scripts/_common.sh
+++ b/scripts/_common.sh
@@ -7,14 +7,14 @@ ynh_check_var () {
     test -n "$1" || ynh_die "$2"
 }
 
-ynh_exit_properly () {  
+ynh_exit_properly () {
     exit_code=$?
     if [ "$exit_code" -eq 0 ]; then
-            exit 0  
+            exit 0
     fi
     trap '' EXIT
     set +eu
-    echo -e "\e[91m \e[1m"  
+    echo -e "\e[91m \e[1m"
     err "$app script has encountered an error."
 
     if type -t CLEAN_SETUP > /dev/null; then
@@ -89,7 +89,7 @@ ynh_local_path_available () {
     fi
 }
 
-# Save listed var in YunoHost app settings 
+# Save listed var in YunoHost app settings
 # usage: ynh_save_args VARNAME1 [VARNAME2 [...]]
 ynh_save_args () {
     for var in $@;
@@ -113,7 +113,7 @@ ynh_mysql_generate_db () {
 
     export db_pwd=$(ynh_string_random) # Generate a random password
     ynh_check_var "$db_pwd" "db_pwd empty"
-    
+
     ynh_mysql_create_db "$db_name" "$db_user" "$db_pwd" # Create the database
 
     ynh_app_setting_set $app mysqlpwd $db_pwd   # Store the password in the app's config
@@ -161,9 +161,9 @@ ynh_setup_source () {
     fi
     echo "$SOURCE_SUM $SOURCE_FILE" |$SUM_PRG -c --status \
         || ynh_die "Corrupt source"
-    
+
     sudo mkdir -p "$DEST"
-    sudo chown $AS_USER: "$DEST" 
+    sudo chown $AS_USER: "$DEST"
     if [ "$(echo ${SOURCE_FILE##*.})" == "gz" ]; then
         ynh_exec_as "$AS_USER" tar xf $SOURCE_FILE -C "$DEST" --strip-components 1
     elif [ "$(echo ${SOURCE_FILE##*.})" == "bz2" ]; then
@@ -171,18 +171,18 @@ ynh_setup_source () {
     elif [ "$(echo ${SOURCE_FILE##*.})" == "zip" ]; then
         mkdir -p "/tmp/$SOURCE_FILE"
         ynh_exec_as "$AS_USER" unzip -q $SOURCE_FILE -d "/tmp/$SOURCE_FILE"
-        ynh_exec_as "$AS_USER" mv "/tmp/$SOURCE_FILE"/./. "$DEST" 
+        ynh_exec_as "$AS_USER" mv "/tmp/$SOURCE_FILE"/./. "$DEST"
         rmdir "$/tmp/$SOURCE_FILE"
     else
         false
     fi
-    
+
     # Apply patches
     if [ -f ${PKG_DIR}/patches/$SOURCE_ID-*.patch  ]; then
         (cd "$DEST" \
         && for p in ${PKG_DIR}/patches/$SOURCE_ID-*.patch; do \
             ynh_exec_as "$AS_USER" patch -p1 < $p; done) \
-            || ynh_die "Unable to apply patches"    
+            || ynh_die "Unable to apply patches"
 
     fi
 
@@ -324,13 +324,13 @@ Homepage: {{ project_url }}
 Standards-Version: 3.9.2
 
 Package: {{ dep_app }}-ynh-deps
-Version: {{ version }} 
+Version: {{ version }}
 Depends: {{ dependencies }}
 Architecture: all
 Description: meta package for {{ app }} (YunoHost app) dependencies
  This meta-package is only responsible of installing its dependencies.
 EOF
-        
+
     ynh_configure app-ynh-deps.control ./$dep_app-ynh-deps.control
     ynh_package_install_from_equivs ./$dep_app-ynh-deps.control \
         || ynh_die "Unable to install dependencies"
@@ -387,11 +387,11 @@ ynh_configure_php_fpm () {
     finalphpconf=/etc/php5/fpm/pool.d/$app.conf
     ynh_configure php-fpm.conf /etc/php5/fpm/pool.d/$app.conf
     sudo chown root: $finalphpconf
-    
+
     finalphpini=/etc/php5/fpm/conf.d/20-$app.ini
     sudo cp ../conf/php-fpm.ini $finalphpini
     sudo chown root: $finalphpini
-    
+
     sudo service php5-fpm reload
 }
 
diff --git a/scripts/install b/scripts/install
index 6eef0a2..4205cbb 100755
--- a/scripts/install
+++ b/scripts/install
@@ -34,10 +34,10 @@ ynh_mysql_generate_db "$user" "$app"
 ynh_system_user_create "$user" "$local_path"
 
 ynh_setup_source "$local_path" "$user"
-    
+
 ynh_configure config.php "$local_path/application/config/config.php"
 
-# Fill LimeSurvey database
+# Fill LimeSurvey database @todo replace by command action from limesurvey
 sed "s/\`prefix_/\`$prefix/g" $local_path/installer/sql/create-mysql.sql > ./structure.sql
 mysql -u $db_user -p$db_pwd $db_user < ./structure.sql
 ynh_configure data.sql ./data.sql
@@ -53,10 +53,10 @@ set -x
 ynh_set_default_perm $local_path
 sudo chmod -R u+w $local_path/tmp
 sudo chmod -R u+w $local_path/upload
-sudo chmod -R u+w $local_path/application/config/
+#~ sudo chmod -R u+w $local_path/application/config/
 
 sudo yunohost app addaccess $app -u $admin
-ynh_sso_access "/index.php?r=admin,/index.php?r=plugins,/scripts"
+ynh_sso_access "/index.php?r=admin"
 
 ynh_configure_php_fpm
 ynh_configure_nginx

From b02660cf9d2480b4c4df4a5ac02a64e66795e663 Mon Sep 17 00:00:00 2001
From: shnoulle <shnoulle@riva.shnoulle.gsill.net>
Date: Mon, 20 Feb 2017 16:16:44 +0100
Subject: [PATCH 2/4] [fix]
 https://github.com/YunoHost-Apps/limesurvey_ynh/issues/24 using config.php
 [fix] partially https://github.com/YunoHost-Apps/limesurvey_ynh/issues/25
 using an alt user for super-super-admin [dev] Add a activatePlugin (to manage
 ls via a ynh plugin (when i done it) [dev] Little fix on installer (warning
 when testing files in patch directory) [dev] Using LimeSurvey install command
 for installing

---
 conf/config.php.j2             |   7 ++-
 conf/data.sql.j2               |  21 ++++---
 patches/app-0001-7ca4932.patch | 106 ---------------------------------
 scripts/_common.sh             |   2 +-
 scripts/install                |  12 ++--
 5 files changed, 21 insertions(+), 127 deletions(-)
 delete mode 100644 patches/app-0001-7ca4932.patch

diff --git a/conf/config.php.j2 b/conf/config.php.j2
index 5a99217..a27eca8 100644
--- a/conf/config.php.j2
+++ b/conf/config.php.j2
@@ -56,7 +56,12 @@ return array(
         // LimeSurvey developers: Set this to 2 to additionally display STRICT PHP error messages and get full access to standard templates
                 'debug'=>0,
                 'debugsql'=>0, // Set this to 1 to enanble sql logging, only active when debug = 2
-				'enableLdap'=>true
+                /* yunohost part */
+                'auth_webserver_user_map' => array( '{{ admin }}'=>'ynh_admin'),// Primary user as ynh admin
+                'auth_webserver_autocreate_user'=>1,
+                'auth_webserver_autocreate_permissions'=>array(
+                        'superadmin' => array('create'=>true,'read'=>true,'update'=>true,'delete'=>true),
+                ),
         )
 );
 /* End of file config.php */
diff --git a/conf/data.sql.j2 b/conf/data.sql.j2
index b53db1f..a736dce 100644
--- a/conf/data.sql.j2
+++ b/conf/data.sql.j2
@@ -1,4 +1,4 @@
-INSERT INTO `lime_plugins` (`id`, `name`, `active`) VALUES 
+INSERT INTO `lime_plugins` (`id`, `name`, `active`) VALUES
 (2,'AuditLog',0),
 (3,'oldUrlCompat',0),
 (4,'ExportR',0),
@@ -6,15 +6,9 @@ INSERT INTO `lime_plugins` (`id`, `name`, `active`) VALUES
 (6,'extendedStartPage',0),
 (7,'ExportSTATAxml',0),
 (8,'QuickMenu',0),
-(9,'AuthLDAP',0);
+(9,'AuthLDAP',1);
 
-INSERT INTO `lime_permissions` (`id`, `entity`, `entity_id`, `uid`, `permission`, `create_p`, `read_p`, `update_p`, `delete_p`, `import_p`, `export_p`) VALUES 
-(1,'global',0,1,'superadmin',0,1,0,0,0,0),
-(2,'global',0,2,'auth_ldap',0,1,0,0,0,0),
-(3,'global',0,2,'surveys',1,0,0,0,0,0);
-
-
-INSERT INTO `lime_plugin_settings` (`id`, `plugin_id`, `model`, `model_id`, `key`, `value`) VALUES 
+INSERT INTO `lime_plugin_settings` (`id`, `plugin_id`, `model`, `model_id`, `key`, `value`) VALUES
 (1,9,NULL,NULL,'server','\"ldap:\\/\\/localhost\"'),
 (2,9,NULL,NULL,'ldapport','\"\"'),
 (3,9,NULL,NULL,'ldapversion','\"3\"'),
@@ -41,8 +35,13 @@ INSERT INTO `lime_plugin_settings` (`id`, `plugin_id`, `model`, `model_id`, `key
 
 INSERT INTO `lime_settings_global` VALUES ('defaultlang','{{ language }}'),('AssetsVersion','2620');
 
-INSERT INTO `lime_users` VALUES (1,'{{ admin }}','9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08','Administrator',0,'{{ language }}','','default','default','default',NULL,1,'2017-02-02 01:03:08',NULL);
+INSERT INTO `lime_users` VALUES (2,'{{ admin }}','9f86d081884c7d659a2feaa0c55ad015a3bf4f1b2b0b822cd15d6c15b0f00a08','Administrator',0,'{{ language }}','','default','default','default',NULL,1,'2017-02-02 01:03:08',NULL);
+
+INSERT INTO `lime_permissions` (`id`, `entity`, `entity_id`, `uid`, `permission`, `create_p`, `read_p`, `update_p`, `delete_p`, `import_p`, `export_p`) VALUES
+(2,'global',0,2,'superadmin',0,1,0,0,0,0),
+(3,'global',0,2,'auth_ldap',0,1,0,0,0,0),
+(4,'global',0,2,'auth_webserver',0,1,0,0,0,0);
 
 {% if is_public == "1" %}
 UPDATE `lime_plugin_settings` SET value='\"0\"' WHERE `id`=21;
-{% endif %} 
+{% endif %}
diff --git a/patches/app-0001-7ca4932.patch b/patches/app-0001-7ca4932.patch
deleted file mode 100644
index 1394085..0000000
--- a/patches/app-0001-7ca4932.patch
+++ /dev/null
@@ -1,106 +0,0 @@
-From 7ca49326dafe4d9896e67aebe414edcd3ce8c1af Mon Sep 17 00:00:00 2001
-From: Denis Chenu <denis@sondages.pro>
-Date: Thu, 19 Jan 2017 00:02:45 +0100
-Subject: [PATCH] [feature] Allow update via PHP cli
-
----
- application/commands/UpdateCommand.php | 90 ++++++++++++++++++++++++++++++++++
- 1 files changed, 90 insertions(+)
- create mode 100644 application/commands/UpdateCommand.php
-
-diff --git a/application/commands/UpdateCommand.php b/application/commands/UpdateCommand.php
-new file mode 100644
-index 0000000..41ef107
---- /dev/null
-+++ b/application/commands/UpdateCommand.php
-@@ -0,0 +1,90 @@
-+<?php
-+ /*
-+ * @author Denis Chenu <denis@sondages.pro>
-+ * @license GPL v3
-+ * @version 0.1
-+ *
-+ * Copyright (C) 2017 Denis Chenu
-+ * This program is free software: you can redistribute it and/or modify
-+ * it under the terms of the GNU Affero General Public License as published by
-+ * the Free Software Foundation, either version 3 of the License, or
-+ * (at your option) any later version.
-+ *
-+ * This program is distributed in the hope that it will be useful,
-+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-+ * GNU General Public License for more details.
-+ *
-+ */
-+class UpdateCommand extends CConsoleCommand
-+{
-+    public function run(){
-+        $this->_setConfigs();
-+        $newDbVersion = (float)Yii::app()->getConfig('dbversionnumber');
-+        $currentDbVersion = (float)Yii::app()->getConfig('DBVersion');
-+        if($newDbVersion > $currentDbVersion){
-+            echo "Update ".Yii::app()->db->connectionString.", prefix :".Yii::app()->db->tablePrefix." from {$currentDbVersion} to {$newDbVersion}\n";
-+            Yii::import('application.helpers.common_helper', true);
-+            Yii::import('application.helpers.update.updatedb_helper', true);
-+            $result=db_upgrade_all($currentDbVersion);/* @todo : fix bad echoing here */
-+            if ($result) {
-+                //printf(gT("Database has been successfully upgraded to version %s"),$dbversionnumber)."\n";
-+                echo "Database has been successfully upgraded to version $newDbVersion \n";
-+            } else {
-+                //echo gT("Please fix this error in your database and try again")."\n";
-+                echo "Please fix this error in your database and try again\n";
-+            }
-+        } else {
-+            echo "no need update ".$newDbVersion ." ". $currentDbVersion ."\n";
-+        }
-+    }
-+
-+    /**
-+     * Fonction to set all needed (and unneeded) config
-+     * @return void
-+     */
-+    private function _setConfigs(){
-+        /* default config */
-+        $aDefaultConfigs = require(Yii::app()->basePath. DIRECTORY_SEPARATOR . 'config' . DIRECTORY_SEPARATOR . 'config-defaults.php');
-+        foreach($aDefaultConfigs as $sConfig=>$defaultConfig){
-+            Yii::app()->setConfig($sConfig,$defaultConfig);
-+        }
-+        /* Fix for badly set rootdir */
-+        $sRootDir=realpath(Yii::app()->basePath. DIRECTORY_SEPARATOR . "..") ;
-+        Yii::app()->setConfig('rootdir',$sRootDir);
-+        Yii::app()->setConfig('publicdir',$sRootDir);
-+        Yii::app()->setConfig('homedir',$sRootDir);
-+        Yii::app()->setConfig('tempdir',$sRootDir.DIRECTORY_SEPARATOR."tmp");
-+        Yii::app()->setConfig('imagedir',$sRootDir.DIRECTORY_SEPARATOR."images");
-+        Yii::app()->setConfig('uploaddir',$sRootDir.DIRECTORY_SEPARATOR."upload");
-+        Yii::app()->setConfig('standardtemplaterootdir',$sRootDir.DIRECTORY_SEPARATOR."templates");
-+        Yii::app()->setConfig('usertemplaterootdir',$sRootDir.DIRECTORY_SEPARATOR."upload".DIRECTORY_SEPARATOR."templates");
-+        Yii::app()->setConfig('styledir',$sRootDir.DIRECTORY_SEPARATOR."styledir");
-+        /* version */
-+        $aVersionConfigs = require(Yii::app()->basePath. DIRECTORY_SEPARATOR . 'config' . DIRECTORY_SEPARATOR . 'version.php');
-+        foreach($aVersionConfigs as $sConfig=>$versionConfig){
-+            Yii::app()->setConfig($sConfig,$versionConfig);
-+        }
-+        /* LS 3 version */
-+        Yii::app()->setConfig('runtimedir',$sRootDir.DIRECTORY_SEPARATOR."tmp".DIRECTORY_SEPARATOR."runtime");
-+        if(file_exists(Yii::app()->basePath. DIRECTORY_SEPARATOR . 'config' . DIRECTORY_SEPARATOR . 'config.php'))
-+        {
-+            $config = require(Yii::app()->basePath. DIRECTORY_SEPARATOR . 'config' . DIRECTORY_SEPARATOR . 'config.php');
-+            if(is_array($config['config']) && !empty($config['config']))
-+            {
-+                foreach($config['config'] as $key=>$value)
-+                    Yii::app()->setConfig($key,$value);
-+            }
-+        }
-+        $oSettings=SettingGlobal::model()->findAll();
-+        if (count($oSettings) > 0)
-+        {
-+            foreach ($oSettings as $oSetting)
-+            {
-+                Yii::app()->setConfig($oSetting->getAttribute('stg_name'), $oSetting->getAttribute('stg_value'));
-+            }
-+        }
-+    }
-+
-+}
-+?>
diff --git a/scripts/_common.sh b/scripts/_common.sh
index 643c1ec..6f88e5d 100644
--- a/scripts/_common.sh
+++ b/scripts/_common.sh
@@ -178,7 +178,7 @@ ynh_setup_source () {
     fi
 
     # Apply patches
-    if [ -f ${PKG_DIR}/patches/$SOURCE_ID-*.patch  ]; then
+    if [ $(find ${PKG_DIR}/patches/ -type f -name "$SOURCE_ID-*.patch"  | wc -l) ]; then
         (cd "$DEST" \
         && for p in ${PKG_DIR}/patches/$SOURCE_ID-*.patch; do \
             ynh_exec_as "$AS_USER" patch -p1 < $p; done) \
diff --git a/scripts/install b/scripts/install
index 4205cbb..e0c804f 100755
--- a/scripts/install
+++ b/scripts/install
@@ -37,18 +37,14 @@ ynh_setup_source "$local_path" "$user"
 
 ynh_configure config.php "$local_path/application/config/config.php"
 
-# Fill LimeSurvey database @todo replace by command action from limesurvey
-sed "s/\`prefix_/\`$prefix/g" $local_path/installer/sql/create-mysql.sql > ./structure.sql
-mysql -u $db_user -p$db_pwd $db_user < ./structure.sql
-ynh_configure data.sql ./data.sql
-mysql -u $db_user -p$db_pwd $db_user < ./data.sql
-
 # Randomize Password user
 ls_cli=$local_path/application/commands/console.php
 set +x
-ynh_exec_as "$user" php $ls_cli resetpassword "$admin" "$(ynh_string_random 24)"
+ynh_exec_as "$user" php $ls_cli install "ynh_admin" "$(ynh_string_random 24)" "Administrator" "$admin@$domain"
 set -x
-
+# Setup^extra DB part (@todo : replace by a plugin system)
+ynh_configure data.sql ./data.sql
+mysql -u $db_user -p$db_pwd $db_user < ./data.sql
 # Set permissions
 ynh_set_default_perm $local_path
 sudo chmod -R u+w $local_path/tmp

From d574e836c9788af9492c55c32469c0972ffe17b8 Mon Sep 17 00:00:00 2001
From: Shnoulle <denis@shnoulle.net>
Date: Mon, 20 Feb 2017 16:21:45 +0100
Subject: [PATCH 3/4] [dev][fix] Add the patchs :whistle:

---
 patches/app-0001-14c81c8.patch | 107 +++++++++++++++++++++++++++++++++
 patches/app-0002-301de6e.patch |  87 +++++++++++++++++++++++++++
 2 files changed, 194 insertions(+)
 create mode 100644 patches/app-0001-14c81c8.patch
 create mode 100644 patches/app-0002-301de6e.patch

diff --git a/patches/app-0001-14c81c8.patch b/patches/app-0001-14c81c8.patch
new file mode 100644
index 0000000..fe54360
--- /dev/null
+++ b/patches/app-0001-14c81c8.patch
@@ -0,0 +1,107 @@
+From 14c81c86b7692794e7b251de3628f9afe353e020 Mon Sep 17 00:00:00 2001
+From: Denis Chenu <denis@sondages.pro>
+Date: Wed, 15 Feb 2017 01:15:35 +0100
+Subject: [PATCH] [feature][yunohost] Allow update via PHP cli - Included in
+ LimeSurvey 3.0
+
+---
+ application/commands/UpdateCommand.php | 90 ++++++++++++++++++++++++++++++++++
+ 1 file changed, 90 insertions(+)
+ create mode 100644 application/commands/UpdateCommand.php
+
+diff --git a/application/commands/UpdateCommand.php b/application/commands/UpdateCommand.php
+new file mode 100644
+index 0000000..faa216f
+--- /dev/null
++++ b/application/commands/UpdateCommand.php
+@@ -0,0 +1,90 @@
++<?php
++ /*
++ * @author Denis Chenu <denis@sondages.pro>
++ * @license GPL v3
++ * @version 0.1.1
++ * @deprecated in LimeSurvey 3.0/develop UpdateDbCommand do it
++ *
++ * Copyright (C) 2017 Denis Chenu
++ * This program is free software: you can redistribute it and/or modify
++ * it under the terms of the GNU Affero General Public License as published by
++ * the Free Software Foundation, either version 3 of the License, or
++ * (at your option) any later version.
++ *
++ * This program is distributed in the hope that it will be useful,
++ * but WITHOUT ANY WARRANTY; without even the implied warranty of
++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
++ * GNU General Public License for more details.
++ *
++ */
++class UpdateCommand extends CConsoleCommand
++{
++    public function run(){
++        $this->_setConfigs();
++        $newDbVersion = (float)Yii::app()->getConfig('dbversionnumber');
++        $currentDbVersion = (float)Yii::app()->getConfig('DBVersion');
++        if($newDbVersion > $currentDbVersion){
++            echo "Update ".Yii::app()->db->connectionString.", prefix :".Yii::app()->db->tablePrefix." from {$currentDbVersion} to {$newDbVersion}\n";
++            Yii::import('application.helpers.common_helper', true);
++            Yii::import('application.helpers.update.updatedb_helper', true);
++            $result=db_upgrade_all($currentDbVersion);/* @todo : fix bad echoing here */
++            if ($result) {
++                echo "Database has been successfully upgraded to version $newDbVersion \n";
++            } else {
++                echo "Please fix this error in your database and try again\n";
++                return 1;
++            }
++        } else {
++            echo "no need update ".$newDbVersion ." ". $currentDbVersion ."\n";
++        }
++    }
++
++    /**
++     * Fonction to set all needed (and unneeded) config
++     * @deprecated in LimeSurvey 3.0/develop version config is set by LimeSurvey Core
++     * @return void
++     */
++    private function _setConfigs(){
++        /* default config */
++        $aDefaultConfigs = require(Yii::app()->basePath. DIRECTORY_SEPARATOR . 'config' . DIRECTORY_SEPARATOR . 'config-defaults.php');
++        foreach($aDefaultConfigs as $sConfig=>$defaultConfig){
++            Yii::app()->setConfig($sConfig,$defaultConfig);
++        }
++        /* Fix for badly set rootdir */
++        $sRootDir=realpath(Yii::app()->basePath. DIRECTORY_SEPARATOR . "..") ;
++        Yii::app()->setConfig('rootdir',$sRootDir);
++        Yii::app()->setConfig('publicdir',$sRootDir);
++        Yii::app()->setConfig('homedir',$sRootDir);
++        Yii::app()->setConfig('tempdir',$sRootDir.DIRECTORY_SEPARATOR."tmp");
++        Yii::app()->setConfig('imagedir',$sRootDir.DIRECTORY_SEPARATOR."images");
++        Yii::app()->setConfig('uploaddir',$sRootDir.DIRECTORY_SEPARATOR."upload");
++        Yii::app()->setConfig('standardtemplaterootdir',$sRootDir.DIRECTORY_SEPARATOR."templates");
++        Yii::app()->setConfig('usertemplaterootdir',$sRootDir.DIRECTORY_SEPARATOR."upload".DIRECTORY_SEPARATOR."templates");
++        Yii::app()->setConfig('styledir',$sRootDir.DIRECTORY_SEPARATOR."styledir");
++        /* version */
++        $aVersionConfigs = require(Yii::app()->basePath. DIRECTORY_SEPARATOR . 'config' . DIRECTORY_SEPARATOR . 'version.php');
++        foreach($aVersionConfigs as $sConfig=>$versionConfig){
++            Yii::app()->setConfig($sConfig,$versionConfig);
++        }
++
++        if(file_exists(Yii::app()->basePath. DIRECTORY_SEPARATOR . 'config' . DIRECTORY_SEPARATOR . 'config.php'))
++        {
++            $config = require(Yii::app()->basePath. DIRECTORY_SEPARATOR . 'config' . DIRECTORY_SEPARATOR . 'config.php');
++            if(is_array($config['config']) && !empty($config['config']))
++            {
++                foreach($config['config'] as $key=>$value) {
++                    Yii::app()->setConfig($key,$value);
++                }
++            }
++        }
++        $oSettings=SettingGlobal::model()->findAll();
++        if (count($oSettings) > 0)
++        {
++            foreach ($oSettings as $oSetting)
++            {
++                Yii::app()->setConfig($oSetting->getAttribute('stg_name'), $oSetting->getAttribute('stg_value'));
++            }
++        }
++    }
++
++}
diff --git a/patches/app-0002-301de6e.patch b/patches/app-0002-301de6e.patch
new file mode 100644
index 0000000..a147c73
--- /dev/null
+++ b/patches/app-0002-301de6e.patch
@@ -0,0 +1,87 @@
+From 301de6eb25dda2b9342a006baadaa068c42b115e Mon Sep 17 00:00:00 2001
+From: Denis Chenu <denis@sondages.pro>
+Date: Wed, 15 Feb 2017 01:59:12 +0100
+Subject: [PATCH] [feature][yunohost] Activate a plugin by command - Needed for
+ update
+
+---
+ application/commands/ActivatePluginCommand.php | 70 ++++++++++++++++++++++++++
+ 1 file changed, 70 insertions(+)
+ create mode 100644 application/commands/ActivatePluginCommand.php
+
+diff --git a/application/commands/ActivatePluginCommand.php b/application/commands/ActivatePluginCommand.php
+new file mode 100644
+index 0000000..512e9a4
+--- /dev/null
++++ b/application/commands/ActivatePluginCommand.php
+@@ -0,0 +1,70 @@
++<?php
++/**
++ * Description
++ *
++ * @author Denis Chenu <denis@sondages.pro>
++ * @copyright 2015 Denis Chenu <http://www.sondages.pro>
++ * @license GPL v3
++ * @version 0.0.1
++ *
++ * This program is free software: you can redistribute it and/or modify
++ * it under the terms of the GNU General Public License as published by
++ * the Free Software Foundation, either version 3 of the License, or
++ * (at your option) any later version.
++ *
++ * This program is distributed in the hope that it will be useful,
++ * but WITHOUT ANY WARRANTY; without even the implied warranty of
++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
++ * GNU General Public License for more details.
++ */
++class ActivatePluginCommand extends CConsoleCommand
++{
++
++    /**
++     * @var string $defaultAction
++     * @see http://www.yiiframework.com/doc/api/1.1/CConsoleCommand#defaultAction-detail
++     */
++    public $defaultAction='activate';
++    /**
++     * Activate a plugin by name
++     * @param string $name The plugin Class name
++     * @return void
++     */
++    public function actionActivate($classname)
++    {
++        $oPluginManager = \Yii::app()->pluginManager;
++        $aDiscoveredPlugins = $oPluginManager->scanPlugins();
++        if(!array_key_exists($classname,$aDiscoveredPlugins)) {
++            echo "Plugin {$classname} are not in your plugin directory\n";
++            return 1;
++        }
++
++        $oPlugin=Plugin::model()->find("name=:name",array(":name"=>$classname));
++        /* If plugin is not installed : just install it */
++        if(!$oPlugin) {
++            $oPlugin = new Plugin();
++            $oPlugin->name   = $classname;
++            $oPlugin->active = 0;
++            $oPlugin->save();
++        }
++        /* Activate the plugin with the event beforeActivate */
++        if ($oPlugin->active == 0)
++        {
++            /* Load the plugin and dispatch beforeActivate event */
++            App()->getPluginManager()->loadPlugin($oPlugin->name, $oPlugin->id);
++            $result = App()->getPluginManager()->dispatchEvent(new PluginEvent('beforeActivate',$this), $oPlugin->name);
++            if ($result->get('success', true)) {
++                $oPlugin->active = 1;
++                if(!$oPlugin->save()){
++                    return 1; /* This must not happen */
++                }
++            } else {
++                echo $result->get('message', 'Failed to activate the plugin.')."\n";
++                return 1;
++            }
++        } else {
++            // No error if try to activate an already activated plugin
++        }
++    }
++
++}

From 25ed10478b4743f4bfd6694c735ed4d1005d13f7 Mon Sep 17 00:00:00 2001
From: "ljf (zamentur)" <zamentur@users.noreply.github.com>
Date: Sat, 1 Apr 2017 13:50:32 +0200
Subject: [PATCH 4/4] [fix] Update sources

---
 app.src | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/app.src b/app.src
index 8202979..6567177 100644
--- a/app.src
+++ b/app.src
@@ -1,3 +1,3 @@
-SOURCE_URL=https://github.com/LimeSurvey/LimeSurvey/archive/a46075a10b6244c850ee11dcf283d38bdd7d8ad5.tar.gz
-SOURCE_SUM=b06778cd6747e4106953810d5aefe9f12d968a3910ce48159bcbb2fe5a61d486
-SOURCE_FILE=limesurvey_2.6.2.1.tar.gz
+SOURCE_URL=https://github.com/LimeSurvey/LimeSurvey/archive/2.64.5+170331.tar.gz
+SOURCE_SUM=ede99fb149feed4a60ea83e540263c912a68fb46c7fca98cb7ff7c5d474f3dc4
+SOURCE_FILE=limesurvey2.64.5+170331.tar.gz