diff --git a/scripts/upgrade b/scripts/upgrade
index 8d111d8..40b5b11 100644
--- a/scripts/upgrade
+++ b/scripts/upgrade
@@ -57,6 +57,8 @@ if [ -z $gui_port ]; then
 
 	mkdir -p $final_path
 	cp -R $OLD_SYNCHOME/.config $final_path/.config
+
+	ynh_remove_app_dependencies
 fi
 #=================================================
 # BACKUP BEFORE UPGRADE THEN ACTIVE TRAP
@@ -98,14 +100,6 @@ ynh_print_info "Upgrading nginx web server configuration..."
 # Create a dedicated nginx config
 ynh_add_nginx_config "gui_port"
 
-#=================================================
-# REMOVE DEPENDENCIES
-#=================================================
-ynh_print_info "Removing dependencies"
-
-# Remove metapackage and its dependencies
-ynh_remove_app_dependencies
-
 #=================================================
 # CREATE DEDICATED USER
 #=================================================