Upgrade to 4.2.1~ynh1

.github/workflows/updater.sh

@@ -0,0 +1,107 @@
+#!/bin/bash
+
+#=================================================
+# PACKAGE UPDATING HELPER
+#=================================================
+
+# This script is meant to be run by GitHub Actions
+# The YunoHost-Apps organisation offers a template Action to run this script periodically
+# Since each app is different, maintainers can adapt its contents so as to perform
+# automatic actions when a new upstream release is detected.
+
+#=================================================
+# FETCHING LATEST RELEASE AND ITS ASSETS
+#=================================================
+
+# Fetching information
+current_version=$(cat manifest.json | jq -j '.version|split("~")[0]')
+repo=$(cat manifest.json | jq -j '.upstream.code|split("https://github.com/")[1]')
+# Some jq magic is needed, because the latest upstream release is not always the latest version (e.g. security patches for older versions)
+version=$(curl --silent "https://api.github.com/repos/$repo/tags" | jq -r '.[] | select( .prerelease != true ) | .name' | sort -V | tail -1)
+assets="https://github.com/YesWiki/yeswiki/archive/refs/tags/$version.tar.gz"
+
+# Later down the script, we assume the version has only digits and dots
+# Sometimes the release name starts with a "v", so let's filter it out.
+# You may need more tweaks here if the upstream repository has different naming conventions. 
+if [[ ${version:0:1} == "v" || ${version:0:1} == "V" ]]; then
+    version=${version:1}
+fi
+
+# Setting up the environment variables
+echo "Current version: $current_version"
+echo "Latest release from upstream: $version"
+echo "VERSION=$version" >> $GITHUB_ENV
+echo "REPO=$repo" >> $GITHUB_ENV
+# For the time being, let's assume the script will fail
+echo "PROCEED=false" >> $GITHUB_ENV
+
+# Proceed only if the retrieved version is greater than the current one
+if ! dpkg --compare-versions "$current_version" "lt" "$version" ; then
+    echo "::warning ::No new version available"
+    exit 0
+# Proceed only if a PR for this new version does not already exist
+elif git ls-remote -q --exit-code --heads https://github.com/$GITHUB_REPOSITORY.git ci-auto-update-v$version ; then
+    echo "::warning ::A branch already exists for this update"
+    exit 0
+fi
+
+#=================================================
+# UPDATE SOURCE FILES
+#=================================================
+
+# Let's download source tarball
+asset_url=$assets
+
+echo "Handling asset at $asset_url"
+
+src="app"
+
+# Create the temporary directory
+tempdir="$(mktemp -d)"
+
+# Download sources and calculate checksum
+filename=${asset_url##*/}
+curl --silent -4 -L $asset_url -o "$tempdir/$filename"
+checksum=$(sha256sum "$tempdir/$filename" | head -c 64)
+
+# Delete temporary directory
+rm -rf $tempdir
+
+# Get extension
+if [[ $filename == *.tar.gz ]]; then
+  extension=tar.gz
+else
+  extension=${filename##*.}
+fi
+
+# Rewrite source file
+cat <<EOT > conf/$src.src
+SOURCE_URL=$asset_url
+SOURCE_SUM=$checksum
+SOURCE_SUM_PRG=sha256sum
+SOURCE_FORMAT=$extension
+SOURCE_IN_SUBDIR=true
+SOURCE_FILENAME=
+SOURCE_EXTRACT=true
+EOT
+echo "... conf/$src.src updated"
+
+#=================================================
+# SPECIFIC UPDATE STEPS
+#=================================================
+
+# Any action on the app's source code can be done.
+# The GitHub Action workflow takes care of committing all changes after this script ends.
+
+#=================================================
+# GENERIC FINALIZATION
+#=================================================
+
+# Replace new version in manifest
+echo "$(jq -s --indent 4 ".[] | .version = \"$version~ynh1\"" manifest.json)" > manifest.json
+
+# No need to update the README, yunohost-bot takes care of it
+
+# The Action will proceed only if the PROCEED environment variable is set to true
+echo "PROCEED=true" >> $GITHUB_ENV
+exit 0

.github/workflows/updater.yml

@@ -0,0 +1,49 @@
+# This workflow allows GitHub Actions to automagically update your app whenever a new upstream release is detected.
+# You need to enable Actions in your repository settings, and fetch this Action from the YunoHost-Apps organization.
+# This file should be enough by itself, but feel free to tune it to your needs.
+# It calls updater.sh, which is where you should put the app-specific update steps.
+name: Check for new upstream releases
+on:
+  # Allow to manually trigger the workflow
+  workflow_dispatch:
+  # Run it every day at 6:00 UTC
+  schedule:
+    - cron:  '0 6 * * *'
+jobs:
+  updater:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Fetch the source code
+        uses: actions/checkout@v2
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+      - name: Run the updater script
+        id: run_updater
+        run: |
+          # Setting up Git user
+          git config --global user.name 'yunohost-bot'
+          git config --global user.email 'yunohost-bot@users.noreply.github.com'
+          # Run the updater script
+          /bin/bash .github/workflows/updater.sh
+      - name: Commit changes
+        id: commit
+        if: ${{ env.PROCEED == 'true' }}
+        run: |
+          git commit -am "Upgrade to v$VERSION"
+      - name: Create Pull Request
+        id: cpr
+        if: ${{ env.PROCEED == 'true' }}
+        uses: peter-evans/create-pull-request@v3
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          commit-message: Update to version ${{ env.VERSION }}
+          committer: 'yunohost-bot <yunohost-bot@users.noreply.github.com>'
+          author: 'yunohost-bot <yunohost-bot@users.noreply.github.com>'
+          signoff: false
+          base: testing
+          branch: ci-auto-update-v${{ env.VERSION }}
+          delete-branch: true
+          title: 'Upgrade to version ${{ env.VERSION }}'
+          body: |
+            Upgrade to v${{ env.VERSION }}
+          draft: false

check_process

@@ -3,9 +3,9 @@
 	; Manifest
 		domain="domain.tld"
 		path="/path"
-		admin="john"
-		language="fr"
 		is_public=1
+		language="fr"
+		admin="john"
 		wiki_name="MyYunoHostWiki"
 	; Actions
 		is_public=1|0
@@ -23,16 +23,16 @@
 		setup_private=1
 		setup_public=1
 		upgrade=1
+		# 2021-05-18-2~ynh2
 		upgrade=1	from_commit=792c90c592f52f8fb1a89c22ab9b73f1e0bc2a3d
+		# 2022.01.16.13~ynh1
+		upgrade=1	from_commit=f577a55539cb2ff54b5cee099e1e22aa4ccea186
 		backup_restore=1
 		multi_instance=1
+		port_already_use=0
 		change_url=1
 		actions=0
 		config_panel=0
 ;;; Options
 Email=
-Notification=change
+Notification=none
-;;; Upgrade options
-	; commit=792c90c592f52f8fb1a89c22ab9b73f1e0bc2a3d
-		name=Merge branch 'testing' into master
-		manifest_arg=domain=DOMAIN&path=PATH&admin=USER&password=password&is_public=1&

conf/app.src

@@ -1,6 +1,7 @@
-SOURCE_URL=https://repository.yeswiki.net/doryphore/yeswiki-doryphore-2022-01-16-13.zip
+SOURCE_URL=https://github.com/YesWiki/yeswiki/archive/refs/tags/v4.2.1.tar.gz
-SOURCE_SUM=2239572babfbd46e8b79ac6333827c55225b2f70990d51e934e82fda8894165f
+SOURCE_SUM=c2819433dec177361ceb9f89e9184650a519e0110d8f6716e34dccc7aa46014a
 SOURCE_SUM_PRG=sha256sum
-SOURCE_FORMAT=zip
+SOURCE_FORMAT=tar.gz
 SOURCE_IN_SUBDIR=true
-SOURCE_FILENAME=yeswiki-doryphore-2022-01-16-13.zip
+SOURCE_FILENAME=
+SOURCE_EXTRACT=true

conf/nginx.conf

@@ -2,12 +2,7 @@
 location __PATH__/ {
 
   # Path to source
-  alias __FINALPATH__/ ;
+  alias __FINALPATH__/;
-
-  # Force usage of https
-  if ($scheme = http) {
-    rewrite ^ https://$server_name$request_uri? permanent;
-  }
 
   index index.php;
 

manifest.json

@@ -6,9 +6,9 @@
         "en": "Wiki that is quick and easy to use",
         "fr": "Wiki facile et rapide à prendre en main"
     },
-    "version": "2022.01.16.13~ynh1",
+    "version": "4.2.1~ynh1",
     "url": "https://yeswiki.net/",
-        "upstream": {
+    "upstream": {
         "license": "AGPL-3.0-only",
         "website": "https://yeswiki.net/",
         "demo": "https://ferme.yeswiki.net/?CreerSonWiki",
@@ -32,7 +32,7 @@
         }
     ],
     "requirements": {
-        "yunohost": ">= 4.2.3"
+        "yunohost": ">= 4.3.0"
     },
     "multi_instance": true,
     "services": [
@@ -52,10 +52,6 @@
                 "example": "/yeswiki",
                 "default": "/yeswiki"
             },
-            {
-                "name": "admin",
-                "type": "user"
-            },
             {
                 "name": "is_public",
                 "type": "boolean",
@@ -63,7 +59,21 @@
                 "help": {
                     "en": "If YesWiki is made public anyone will be able to view the wiki",
                     "fr": "Si YesWiki est rendu publique toute personne pourra consulter le wiki"
-                 }  
+                }
+            },
+            {
+                "name": "language",
+                "type": "string",
+                "ask": {
+                    "en": "Choose the application language",
+                    "fr": "Choisissez la langue de l'application"
+                },
+                "choices": ["fr", "en", "ca", "es", "nl", "pt"],
+                "default": "fr"
+            },
+            {
+                "name": "admin",
+                "type": "user"
             },
             {
                 "name": "wiki_name",
@@ -76,17 +86,7 @@
                 "help": {
                     "en": "If you want a name with spaces: replace them with %20 for each space.",
                     "fr": "Si vous souhaitez un nom avec des espacements : remplacez les par %20 pour chaque espace"
-                 }  
+                }
-            },
-            {
-                "name": "language",
-                "type": "string",
-                "ask": {
-                    "en": "Choose the application language",
-                    "fr": "Choisissez la langue de l'application"
-                },
-                "choices": ["fr", "en", "ca", "es", "nl", "pt"],
-                "default": "fr"
             }
         ]
     }

scripts/_common.sh

@@ -7,7 +7,7 @@
 YNH_PHP_VERSION="7.3"
 
 # dependencies used by the app
-extra_php_dependencies="php${YNH_PHP_VERSION}-zip"
+pkg_dependencies="php${YNH_PHP_VERSION}-zip"
 
 loginldap_version="2021-03-01-2"
 

scripts/backup

@@ -6,7 +6,7 @@
 # IMPORT GENERIC HELPERS
 #=================================================
 
-#Keep this path for calling _common.sh inside the execution's context of backup and restore scripts
+# Keep this path for calling _common.sh inside the execution's context of backup and restore scripts
 source ../settings/scripts/_common.sh
 source /usr/share/yunohost/helpers
 
@@ -15,7 +15,6 @@ source /usr/share/yunohost/helpers
 #=================================================
 
 ynh_clean_setup () {
-	### Remove this function if there's nothing to clean before calling the remove script.
 	true
 }
 # Exit if an error occurs during the execution of the script

scripts/change_url

@@ -30,9 +30,9 @@ ynh_script_progression --message="Loading installation settings..." --weight=1
 final_path=$(ynh_app_setting_get --app=$app --key=final_path)
 
 #=================================================
-# BACKUP BEFORE UPGRADE THEN ACTIVE TRAP
+# BACKUP BEFORE CHANGE URL THEN ACTIVE TRAP
 #=================================================
-ynh_script_progression --message="Backing up YesWiki before changing its URL (may take a while)..." --weight=3
+ynh_script_progression --message="Backing up the app before changing its URL (may take a while)..." --weight=3
 
 # Backup the current version of the app
 ynh_backup_before_upgrade
@@ -40,7 +40,7 @@ ynh_clean_setup () {
 	# Remove the new domain config file, the remove script won't do it as it doesn't know yet its location.
 	ynh_secure_remove --file="/etc/nginx/conf.d/$new_domain.d/$app.conf"
 
-	# restore it if the upgrade fails
+	# Restore it if the upgrade fails
 	ynh_restore_upgradebackup
 }
 # Exit if an error occurs during the execution of the script
@@ -96,6 +96,9 @@ fi
 #=================================================
 # SPECIFIC MODIFICATIONS
 #=================================================
+# UPDATE A CONFIG FILE
+#=================================================
+ynh_script_progression --message="Updating a configuration file..."
 
 ynh_replace_string --match_string="https://$old_domain${old_path%/}" --replace_string="https://$new_domain${new_path%/}" --target_file="$final_path/wakka.config.php"
 

scripts/install

@@ -14,7 +14,6 @@ source /usr/share/yunohost/helpers
 #=================================================
 
 ynh_clean_setup () {
-	### Remove this function if there's nothing to clean before calling the remove script.
 	true
 }
 # Exit if an error occurs during the execution of the script
@@ -26,10 +25,10 @@ ynh_abort_if_errors
 
 domain=$YNH_APP_ARG_DOMAIN
 path_url=$YNH_APP_ARG_PATH
-admin=$YNH_APP_ARG_ADMIN
 is_public=$YNH_APP_ARG_IS_PUBLIC
-wiki_name=$YNH_APP_ARG_WIKI_NAME
 language=$YNH_APP_ARG_LANGUAGE
+admin=$YNH_APP_ARG_ADMIN
+wiki_name=$YNH_APP_ARG_WIKI_NAME
 
 app=$YNH_APP_INSTANCE_NAME
 
@@ -51,11 +50,26 @@ ynh_script_progression --message="Storing installation settings..." --weight=1
 
 ynh_app_setting_set --app=$app --key=domain --value=$domain
 ynh_app_setting_set --app=$app --key=path --value=$path_url
-ynh_app_setting_set --app=$app --key=admin --value=$admin
 ynh_app_setting_set --app=$app --key=language --value=$language
+ynh_app_setting_set --app=$app --key=admin --value=$admin
 
 #=================================================
 # STANDARD MODIFICATIONS
+#=================================================
+# INSTALL DEPENDENCIES
+#=================================================
+ynh_script_progression --message="Installing dependencies..."
+
+ynh_install_app_dependencies $pkg_dependencies
+
+#=================================================
+# CREATE DEDICATED USER
+#=================================================
+ynh_script_progression --message="Configuring system user..." --weight=1
+
+# Create a system user
+ynh_system_user_create --username=$app --home_dir="$final_path"
+
 #=================================================
 # CREATE A MYSQL DATABASE
 #=================================================
@@ -66,14 +80,6 @@ db_user=$db_name
 ynh_app_setting_set --app=$app --key=db_name --value=$db_name
 ynh_mysql_setup_db --db_user=$db_user --db_name=$db_name
 
-#=================================================
-# CREATE DEDICATED USER
-#=================================================
-ynh_script_progression --message="Configuring system user..." --weight=1
-
-# Create a system user
-ynh_system_user_create --username=$app --home_dir="$final_path"
-
 #=================================================
 # DOWNLOAD, CHECK AND UNPACK SOURCE
 #=================================================
@@ -83,6 +89,19 @@ ynh_app_setting_set --app=$app --key=final_path --value=$final_path
 # Download, check integrity, uncompress and patch the source from app.src
 ynh_setup_source --dest_dir="$final_path"
 
+chmod 750 "$final_path"
+chmod -R o-rwx "$final_path"
+chown -R $app:www-data "$final_path"
+
+#=================================================
+# PHP-FPM CONFIGURATION
+#=================================================
+ynh_script_progression --message="Configuring PHP-FPM..." --weight=8
+
+# Create a dedicated PHP-FPM config
+ynh_add_fpm_config
+phpversion=$(ynh_app_setting_get --app=$app --key=phpversion)
+
 #=================================================
 # NGINX CONFIGURATION
 #=================================================
@@ -91,24 +110,19 @@ ynh_script_progression --message="Configuring NGINX web server..." --weight=1
 # Create a dedicated NGINX config
 ynh_add_nginx_config
 
-#=================================================
-# PHP-FPM CONFIGURATION
-#=================================================
-ynh_script_progression --message="Configuring PHP-FPM..." --weight=8
-
-# Create a dedicated PHP-FPM config
-ynh_add_fpm_config --package="$extra_php_dependencies"
-phpversion=$(ynh_app_setting_get --app=$app --key=phpversion)
-
 #=================================================
 # SPECIFIC SETUP
+#=================================================
+# INSTALL COMPOSER DEPENDENCIES
+#=================================================
+ynh_script_progression --message="Installing composer dependencies..."
+
+ynh_exec_warn_less ynh_install_composer --phpversion="$phpversion" --workdir="$final_path"
+
 #=================================================
 # SETUP APPLICATION WITH CURL
 #=================================================
 
-# Set right permissions for cURL install
-chown -R $app:$app $final_path
-
 # Set the app as temporarily public for cURL call
 ynh_permission_update --permission="main" --add="visitors"
 
@@ -116,10 +130,8 @@ ynh_permission_update --permission="main" --add="visitors"
 ynh_systemd_action --service_name=nginx --action=reload
 
 # Installation with curl
-
 ynh_script_progression --message="Finalizing installation..." --weight=2
 
-
 admin_temp_pass=$(ynh_string_random 6)
 
 ynh_local_curl "/?PagePrincipale&installAction=install" "config[default_language]=$language" "config[wakka_name]=$wiki_name" \
@@ -131,6 +143,11 @@ ynh_local_curl "/?PagePrincipale&installAction=install" "config[default_language
 # authorization of html
 ynh_replace_string --match_string="'allow_raw_html' => false," --replace_string="'allow_raw_html' => true," --target_file="$final_path/wakka.config.php"
 
+ynh_replace_string --match_string="yeswiki_release' \?=> \?'.*',$" --replace_string="yeswiki_release' => '$(ynh_app_upstream_version)'," --target_file="$final_path/wakka.config.php"
+
+# Remove the public access
+ynh_permission_update --permission="main" --remove="visitors"
+
 #=================================================
 # DOWNLOAD AND CONFIGURE LDAP PLUGIN
 #=================================================
@@ -146,20 +163,12 @@ unzip extension-loginldap-$loginldap_version.zip -d $final_path/tools
 ynh_app_setting_set --app=$app --key=loginldap_version --value=$loginldap_version
 
 # Add config at the end of wakka.config.php
-ynh_replace_string --match_string=");"\
+ynh_replace_string --match_string=");" --replace_string="  'ldap_host' => '127.0.0.1',\n);" --target_file="$final_path/wakka.config.php"
- --replace_string="  'ldap_host' => '127.0.0.1',\n);"\
- --target_file="$final_path/wakka.config.php"
 
-ynh_replace_string --match_string=");"\
+ynh_replace_string --match_string=");" --replace_string="  'ldap_port' => '389',\n);" --target_file="$final_path/wakka.config.php"
- --replace_string="  'ldap_port' => '389',\n);"\
- --target_file="$final_path/wakka.config.php"
 
-ynh_replace_string --match_string=");"\
+ynh_replace_string --match_string=");" --replace_string="  'ldap_base' => 'ou=users,dc=yunohost,dc=org'\n);" --target_file="$final_path/wakka.config.php"
- --replace_string="  'ldap_base' => 'ou=users,dc=yunohost,dc=org'\n);"\
- --target_file="$final_path/wakka.config.php"
 
-#=================================================
-# GENERIC FINALIZATION
 #=================================================
 # SECURE FILES AND DIRECTORIES
 #=================================================
@@ -167,15 +176,19 @@ ynh_replace_string --match_string=");"\
 # Set permissions to app files 
 yeswiki_update_dir_rights $app $final_path
 
+#=================================================
+# GENERIC FINALIZATION
 #=================================================
 # SETUP SSOWAT
 #=================================================
 ynh_script_progression --message="Configuring permissions..." --weight=1
 
-# Make app public if necessary or protect it
+# Make app public if necessary
-if [ $is_public -eq 0 ]
+if [ $is_public -eq 1 ]
 then
-	ynh_permission_update --permission="main" --remove="visitors"
+	# Everyone can access the app.
+	# The "main" permission is automatically created before the install script.
+	ynh_permission_update --permission="main" --add="visitors"
 fi
 
 #=================================================

scripts/remove

@@ -35,7 +35,7 @@ ynh_mysql_remove_db --db_user=$db_user --db_name=$db_name
 #=================================================
 # REMOVE APP MAIN DIR
 #=================================================
-ynh_script_progression --message="Removing YesWiki main directory..." --weight=1
+ynh_script_progression --message="Removing app main directory..." --weight=1
 
 # Remove the app directory securely
 ynh_secure_remove --file="$final_path"

scripts/restore

@@ -6,6 +6,7 @@
 # IMPORT GENERIC HELPERS
 #=================================================
 
+# Keep this path for calling _common.sh inside the execution's context of backup and restore scripts
 source ../settings/scripts/_common.sh
 source /usr/share/yunohost/helpers
 
@@ -14,7 +15,6 @@ source /usr/share/yunohost/helpers
 #=================================================
 
 ynh_clean_setup () {
-	#### Remove this function if there's nothing to clean before calling the remove script.
 	true
 }
 # Exit if an error occurs during the execution of the script
@@ -23,7 +23,7 @@ ynh_abort_if_errors
 #=================================================
 # LOAD SETTINGS
 #=================================================
-ynh_script_progression --message="Loading settings..." --weight=2
+ynh_script_progression --message="Loading installation settings..." --weight=2
 
 app=$YNH_APP_INSTANCE_NAME
 
@@ -44,12 +44,6 @@ test ! -d $final_path \
 
 #=================================================
 # STANDARD RESTORATION STEPS
-#=================================================
-# RESTORE THE NGINX CONFIGURATION
-#=================================================
-
-ynh_restore_file --origin_path="/etc/nginx/conf.d/$domain.d/$app.conf"
-
 #=================================================
 # RECREATE THE DEDICATED USER
 #=================================================
@@ -61,28 +55,41 @@ ynh_system_user_create --username=$app --home_dir="$final_path"
 #=================================================
 # RESTORE THE APP MAIN DIR
 #=================================================
-ynh_script_progression --message="Restoring YesWiki main directory..." --weight=2
+ynh_script_progression --message="Restoring the app main directory..." --weight=2
 
 ynh_restore_file --origin_path="$final_path"
 
-#=================================================
+chmod 750 "$final_path"
-# RESTORE USER RIGHTS
+chmod -R o-rwx "$final_path"
-#=================================================
+chown -R $app:www-data "$final_path"
 
 # Restore permissions on app files
 yeswiki_update_dir_rights $app $final_path
 
+#=================================================
+# SPECIFIC RESTORATION
+#=================================================
+# REINSTALL DEPENDENCIES
+#=================================================
+ynh_script_progression --message="Reinstalling dependencies..."
+
+# Define and install dependencies
+ynh_install_app_dependencies $pkg_dependencies
+
 #=================================================
 # RESTORE THE PHP-FPM CONFIGURATION
 #=================================================
-ynh_script_progression --message="Reconfiguring PHP-FPM..." --weight=11
+ynh_script_progression --message="Restoring the PHP-FPM configuration..." --weight=11
 
 ynh_restore_file --origin_path="/etc/php/$phpversion/fpm/pool.d/$app.conf"
 
-ynh_add_fpm_config --package="$extra_php_dependencies"
-
 #=================================================
-# SPECIFIC RESTORATION
+# RESTORE THE NGINX CONFIGURATION
+#=================================================
+ynh_script_progression --message="Restoring the NGINX web server configuration..."
+
+ynh_restore_file --origin_path="/etc/nginx/conf.d/$domain.d/$app.conf"
+
 #=================================================
 # RESTORE THE MYSQL DATABASE
 #=================================================
@@ -97,9 +104,9 @@ ynh_mysql_connect_as --user=$db_user --password=$db_pwd --database=$db_name < ./
 #=================================================
 # RELOAD NGINX AND PHP-FPM
 #=================================================
-ynh_script_progression --message="Reloading NGINX web server and PHP-FPM.." --weight=1
+ynh_script_progression --message="Reloading NGINX web server and PHP-FPM..." --weight=1
 
-ynh_systemd_action --service_name=php${phpversion}-fpm --action=reload
+ynh_systemd_action --service_name=php$phpversion-fpm --action=reload
 ynh_systemd_action --service_name=nginx --action=reload
 
 #=================================================

scripts/upgrade

@@ -18,37 +18,47 @@ app=$YNH_APP_INSTANCE_NAME
 
 domain=$(ynh_app_setting_get --app=$app --key=domain)
 path_url=$(ynh_app_setting_get --app=$app --key=path)
+language=$(ynh_app_setting_get --app=$app --key=language)
 admin=$(ynh_app_setting_get --app=$app --key=admin)
 final_path=$(ynh_app_setting_get --app=$app --key=final_path)
-language=$(ynh_app_setting_get --app=$app --key=language)
 db_name=$(ynh_app_setting_get --app=$app --key=db_name)
 phpversion=$(ynh_app_setting_get --app=$app --key=phpversion)
 
 #=================================================
 # CHECK VERSION
 #=================================================
+ynh_script_progression --message="Checking version..."
 
 upgrade_type=$(ynh_check_app_version_changed)
 
 #=================================================
 # BACKUP BEFORE UPGRADE THEN ACTIVE TRAP
 #=================================================
-ynh_script_progression --message="Backing up YesWiki before upgrading (may take a while)..." --weight=6
+ynh_script_progression --message="Backing up the app before upgrading (may take a while)..." --weight=6
 
 # Backup the current version of the app
 ynh_backup_before_upgrade
 ynh_clean_setup () {
-	# restore it if the upgrade fails
+	# Restore it if the upgrade fails
 	ynh_restore_upgradebackup
 }
 # Exit if an error occurs during the execution of the script
 ynh_abort_if_errors
 
+#=================================================
+# STANDARD UPGRADE STEPS
 #=================================================
 # ENSURE DOWNWARD COMPATIBILITY
 #=================================================
 ynh_script_progression --message="Ensuring downward compatibility..." --weight=1
 
+# Cleaning legacy permissions
+if ynh_legacy_permissions_exists; then
+	ynh_legacy_permissions_delete_all
+
+	ynh_app_setting_delete --app=$app --key=is_public
+fi
+
 # If db_name doesn't exist, create it
 if [ -z "$db_name" ]; then
 	db_name=$(ynh_sanitize_dbid --db_name=$app)
@@ -61,13 +71,6 @@ if [ -z "$final_path" ]; then
 	ynh_app_setting_set --app=$app --key=final_path --value=$final_path
 fi
 
-# Cleaning legacy permissions
-if ynh_legacy_permissions_exists; then
-	ynh_legacy_permissions_delete_all
-
-	ynh_app_setting_delete --app=$app --key=is_public
-fi
-
 #=================================================
 # CREATE DEDICATED USER
 #=================================================
@@ -76,8 +79,6 @@ ynh_script_progression --message="Making sure dedicated system user exists..." -
 # Create a dedicated user (if not existing)
 ynh_system_user_create --username=$app --home_dir="$final_path"
 
-#=================================================
-# STANDARD UPGRADE STEPS
 #=================================================
 # DOWNLOAD, CHECK AND UNPACK SOURCE
 #=================================================
@@ -89,11 +90,42 @@ then
 	# Download, check integrity, uncompress and patch the source from app.src
 	ynh_setup_source --dest_dir="$final_path"
 
-	ynh_replace_string --match_string="yeswiki_release' \?=> \?'.*',$"\
+	ynh_replace_string --match_string="yeswiki_release' \?=> \?'.*',$" --replace_string="yeswiki_release' => '$(ynh_app_upstream_version)'," --target_file="$final_path/wakka.config.php"
-		 --replace_string="yeswiki_release' => '$(ynh_app_upstream_version)',"\
-		 --target_file="$final_path/wakka.config.php"
 fi
 
+chmod 750 "$final_path"
+chmod -R o-rwx "$final_path"
+chown -R $app:www-data "$final_path"
+
+#=================================================
+# PHP-FPM CONFIGURATION
+#=================================================
+ynh_script_progression --message="Upgrading PHP-FPM configuration..." --weight=5
+
+# Create a dedicated PHP-FPM config
+ynh_add_fpm_config
+
+#=================================================
+# NGINX CONFIGURATION
+#=================================================
+ynh_script_progression --message="Upgrading NGINX web server configuration..." --weight=2
+
+# Create a dedicated NGINX config
+ynh_add_nginx_config
+
+#=================================================
+# SPECIFIC UPGRADE
+#=================================================
+# UPDATE COMPOSER DEPENDENCIES
+#=================================================
+ynh_script_progression --message="Updating composer dependencies..."
+
+ynh_exec_warn_less ynh_composer_exec --workdir="$final_path" --commands="update"
+
+#=================================================
+# DOWNLOAD AND CONFIGURE LDAP PLUGIN
+#=================================================
+
 if [[ $(ynh_app_setting_get --app=$app --key=loginldap_version) != $loginldap_version ]]
 then
 	ynh_script_progression --message="Upgrading LDAP plugin..." --weight=3
@@ -110,38 +142,14 @@ then
 	if ! grep -q "ldap_host" "$final_path/wakka.config.php"
 	then
 		# Add LDAP config at the end of wakka.config.php
-		ynh_replace_string --match_string=");"\
+		ynh_replace_string --match_string=");" --replace_string="  'ldap_host' => '127.0.0.1',\n);" --target_file="$final_path/wakka.config.php"
-		 --replace_string="  'ldap_host' => '127.0.0.1',\n);"\
-		 --target_file="$final_path/wakka.config.php"
 
-		ynh_replace_string --match_string=");"\
+		ynh_replace_string --match_string=");" --replace_string="  'ldap_port' => '389',\n);" --target_file="$final_path/wakka.config.php"
-		 --replace_string="  'ldap_port' => '389',\n);"\
-		 --target_file="$final_path/wakka.config.php"
 
-		ynh_replace_string --match_string=");"\
+		ynh_replace_string --match_string=");" --replace_string="  'ldap_base' => 'ou=users,dc=yunohost,dc=org'\n);" --target_file="$final_path/wakka.config.php"
-		 --replace_string="  'ldap_base' => 'ou=users,dc=yunohost,dc=org'\n);"\
-		 --target_file="$final_path/wakka.config.php"
 	fi
 fi
 
-#=================================================
-# NGINX CONFIGURATION
-#=================================================
-ynh_script_progression --message="Upgrading NGINX web server configuration..." --weight=2
-
-# Create a dedicated NGINX config
-ynh_add_nginx_config
-
-#=================================================
-# PHP-FPM CONFIGURATION
-#=================================================
-ynh_script_progression --message="Upgrading PHP-FPM configuration..." --weight=5
-
-# Create a dedicated PHP-FPM config
-ynh_add_fpm_config --package="$extra_php_dependencies"
-
-#=================================================
-# GENERIC FINALIZATION
 #=================================================
 # SECURE FILES AND DIRECTORIES
 #=================================================
@@ -149,6 +157,8 @@ ynh_add_fpm_config --package="$extra_php_dependencies"
 # Set permissions on app files
 yeswiki_update_dir_rights $app $final_path
 
+#=================================================
+# GENERIC FINALIZATION
 #=================================================
 # RELOAD NGINX
 #=================================================

sources/extra_files/app/.gitignore

@@ -1,2 +0,0 @@
-*~
-*.sw[op]

sources/patches/.gitignore

@@ -1,2 +0,0 @@
-*~
-*.sw[op]