diff --git a/data/hooks/restore/29-conf_nginx b/data/hooks/restore/29-conf_nginx
index 245c1248c..0795f53df 100644
--- a/data/hooks/restore/29-conf_nginx
+++ b/data/hooks/restore/29-conf_nginx
@@ -1,6 +1,7 @@
 backup_dir="$1/conf/nginx"
 
-sudo cp -a $backup_dir/. /etc/nginx/conf.d
+# Copy all conf except apps specific conf located in DOMAIN.d
+sudo find $backup_dir/ -mindepth 1 -maxdepth 1 -name '*.d' -or -exec sudo cp -a {} /etc/nginx/conf.d/ \;
 
 # Restart to use new conf and certs
 sudo service nginx restart